Archive for July 1st, 2006

July 1, 2006

Citation styles

So here’s a crazy idea. I’ve been thinking about how bibliography software generates reference lists that are formatted for a specific journal. Obviously Endnote lets you import styles, but how about all those non-Endnote users? RefDB employs SGML, XML, XSL, Docbook, LaTeX and so on but (a) is broken and (b) that’s a PITA for most people. It would be nice if all journals supplied something like standard XSL that you could use, but they don’t and who wants to define their own? Refbase currently includes a small number of journal styles that are hard-coded in PHP.

So I thought – in a web-based application, couldn’t you design a form that allows the user to define style? There are lots of styles, but a finite number of elements. Text may be bold or italic. Author separators may be commas, semi-colons, with or without ‘and’ for last name. Author names may be full or initials. Article titles may or may not be included. And so on. It shouldn’t be too hard to analyse some journals, figure out all the combinations and let a user specify these in a form, then apply them to the reference list.

July 1, 2006

Bio::Blogs #1

The first edition of Bio::Blogs, a new blog carnival to showcase bioinformatics and computational biology blogs, is online over at Pedro’s blog, Public Rambling. There’s some good stuff there so go take a look.

I’m hosting the August 1 edition here, so you have a month to get surfing, thinking and posting. Mail your entries to bioblogs(at)gmail(dot)com.

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